Conferences related to DNA Sequencing

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Oceans 2020 MTS/IEEE GULF COAST

To promote awareness, understanding, advancement and application of ocean engineering and marine technology. This includes all aspects of science, engineering, and technology that address research, development, and operations pertaining to all bodies of water. This includes the creation of new capabilities and technologies from concept design through prototypes, testing, and operational systems to sense, explore, understand, develop, use, and responsibly manage natural resources.

  • OCEANS 2018 MTS/IEEE Charleston

    Ocean, coastal, and atmospheric science and technology advances and applications

  • OCEANS 2017 - Anchorage

    Papers on ocean technology, exhibits from ocean equipment and service suppliers, student posters and student poster competition, tutorials on ocean technology, workshops and town meetings on policy and governmental process.

  • OCEANS 2016

    The Marine Technology Scociety and the Oceanic Engineering Society of the IEEE cosponor a joint annual conference and exposition on ocean science, engineering, and policy. The OCEANS conference covers four days. One day for tutorials and three for approx. 500 technical papers and 150 -200 exhibits.

  • OCEANS 2015

    The Marine Technology Scociety and the Oceanic Engineering Society of the IEEE cosponor a joint annual conference and exposition on ocean science, engineering, and policy. The OCEANS conference covers four days. One day for tutorials and three for approx. 450 technical papers and 150-200 exhibits.

  • OCEANS 2014

    The OCEANS conference covers four days. One day for tutorials and three for approx. 450 technical papers and 150-200 exhibits.

  • OCEANS 2013

    Three days of 8-10 tracks of technical sessions (400-450 papers) and concurent exhibition (150-250 exhibitors)

  • OCEANS 2012

    Ocean related technology. Tutorials and three days of technical sessions and exhibits. 8-12 parallel technical tracks.

  • OCEANS 2011

    The Marine Technology Society and the Oceanic Engineering Scociety of the IEEE cosponsor a joint annual conference and exposition on ocean science engineering, and policy.

  • OCEANS 2010

    The Marine Technology Society and the Oceanic Engineering Scociety of the IEEE cosponsor a joint annual conference and exposition on ocean science engineering, and policy.

  • OCEANS 2009

  • OCEANS 2008

    The Marine Technology Society (MTS) and the Oceanic Engineering Society (OES) of the Institute of Electrical and Electronic Engineers (IEEE) cosponsor a joint conference and exposition on ocean science, engineering, education, and policy. Held annually in the fall, it has become a focal point for the ocean and marine community to meet, learn, and exhibit products and services. The conference includes technical sessions, workshops, student poster sessions, job fairs, tutorials and a large exhibit.

  • OCEANS 2007

  • OCEANS 2006

  • OCEANS 2005

  • OCEANS 2004

  • OCEANS 2003

  • OCEANS 2002

  • OCEANS 2001

  • OCEANS 2000

  • OCEANS '99

  • OCEANS '98

  • OCEANS '97

  • OCEANS '96


2019 41st Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC)

The conference program will consist of plenary lectures, symposia, workshops andinvitedsessions of the latest significant findings and developments in all the major fields ofbiomedical engineering.Submitted papers will be peer reviewed. Accepted high quality paperswill be presented in oral and postersessions, will appear in the Conference Proceedings and willbe indexed in PubMed/MEDLINE & IEEE Xplore


2019 IEEE Industry Applications Society Annual Meeting

The Annual Meeting is a gathering of experts who work and conduct research in the industrial applications of electrical systems.


2019 IEEE International Symposium on Information Theory (ISIT)

Information theory and coding theory and their applications in communications and storage, data compression, wireless communications and networks, cryptography and security, information theory and statistics, detection and estimation, signal processing, big data analytics, pattern recognition and learning, compressive sensing and sparsity, complexity and computation theory, Shannon theory, quantum information and coding theory, emerging applications of information theory, information theory in biology.


ICASSP 2019 - 2019 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)

ICASSP is the world’s largest and most comprehensive technical conference focused on signal processing and its applications. The conference will feature world-class presentations by internationally renowned speakers, cutting-edge session topics and provide a fantastic opportunity to network with like-minded professionals from around the world.


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Periodicals related to DNA Sequencing

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Automation Science and Engineering, IEEE Transactions on

The IEEE Transactions on Automation Sciences and Engineering (T-ASE) publishes fundamental papers on Automation, emphasizing scientific results that advance efficiency, quality, productivity, and reliability. T-ASE encourages interdisciplinary approaches from computer science, control systems, electrical engineering, mathematics, mechanical engineering, operations research, and other fields. We welcome results relevant to industries such as agriculture, biotechnology, healthcare, home automation, maintenance, manufacturing, pharmaceuticals, retail, ...


Biomedical Circuits and Systems, IEEE Transactions on

The Transactions on Biomedical Circuits and Systems addresses areas at the crossroads of Circuits and Systems and Life Sciences. The main emphasis is on microelectronic issues in a wide range of applications found in life sciences, physical sciences and engineering. The primary goal of the journal is to bridge the unique scientific and technical activities of the Circuits and Systems ...


Circuits and Systems II: Express Briefs, IEEE Transactions on

Part I will now contain regular papers focusing on all matters related to fundamental theory, applications, analog and digital signal processing. Part II will report on the latest significant results across all of these topic areas.


Computational Biology and Bioinformatics, IEEE/ACM Transactions on

Specific topics of interest include, but are not limited to, sequence analysis, comparison and alignment methods; motif, gene and signal recognition; molecular evolution; phylogenetics and phylogenomics; determination or prediction of the structure of RNA and Protein in two and three dimensions; DNA twisting and folding; gene expression and gene regulatory networks; deduction of metabolic pathways; micro-array design and analysis; proteomics; ...


Computer

Computer, the flagship publication of the IEEE Computer Society, publishes peer-reviewed technical content that covers all aspects of computer science, computer engineering, technology, and applications. Computer is a resource that practitioners, researchers, and managers can rely on to provide timely information about current research developments, trends, best practices, and changes in the profession.


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Most published Xplore authors for DNA Sequencing

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Xplore Articles related to DNA Sequencing

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Novel Design for Multi-Channel DNA Sequencing System

2007 IEEE/ICME International Conference on Complex Medical Engineering, 2007

Today most commercial DNA sequencing systems' signal detection was based on CCD or PMT. The CCD based system needs cooled CCD, whose cost is high and the sensitivity is relatively low. The PMT based system using mechanical scanning to realize multi-channel detection, whose stability is relatively low and the working noise is high. In this paper, a novel multi-channel DNA ...


Dual mode CMOS ISFET sensor for DNA sequencing

2017 International Conference on Intelligent Computing, Instrumentation and Control Technologies (ICICICT), 2017

Genetic disorders can be identified and treated in the most suitable manner by knowing the pattern of its bases. DNA sequencing is the process of detection of the order in which these nucleotides are arranged in DNA. To overcome the disadvantages of traditional methods of DNA sequencing CMOS ISFET sensors can be used. Dual mode CMOS ISFET has the provision ...


Novel approach of DNA sequencing algorithm to image security

2016 International Conference on Signal Processing, Communication, Power and Embedded System (SCOPES), 2016

DNA computing is new wave of advancement in the field of cryptography. DNA is an ultra compact information storage medium with high security and theoretically unbreakable algorithm. We present a new technique for securing the image using DNA computing. In practical steganography images can be broken with some assumption on the information theoretic entropy of the plaintext. We discuss a ...


The Analysis on the Signals Denoising and Single Base Pair Resolution of DNA Sequencing

2006 International Symposium on Biophotonics, Nanophotonics and Metamaterials, 2006

Capillary electrophoresis - Laser Induced fluorescence (CE - LIF) signals in DNA sequencing analysis are often contaminated by random noise, which has negative influence on the accuracy and detection limit of analysis. Wavelet analysis is a powerful tool for signal denoising comparing with other conventional denoising methods, but it needs more processing time in computer. Especially in some real-time embedded ...


High speed DNA sequencing accelerator using FPGA

2008 International Conference on Electronic Design, 2008

This paper presents the development of High Speed DNA sequencing accelerator based on Smith-Waterman algorithm using FPGA. The scope of the paper focuses on speed optimization with parallelism. Smith-Waterman algorithm is sensitive algorithm used for procedure of DNA sequence alignments in computational molecular biology. As the number of sequence database increase exponentially, it affects the performance of Smith-Waterman algorithm in ...


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Educational Resources on DNA Sequencing

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IEEE-USA E-Books

  • Novel Design for Multi-Channel DNA Sequencing System

    Today most commercial DNA sequencing systems' signal detection was based on CCD or PMT. The CCD based system needs cooled CCD, whose cost is high and the sensitivity is relatively low. The PMT based system using mechanical scanning to realize multi-channel detection, whose stability is relatively low and the working noise is high. In this paper, a novel multi-channel DNA sequencing system was presented, which was based on single PMT confocal fluorescence detection and optical scanning adopting an f-theta lens. Capillary electrophoresis experiments were executed in the system for DNA marker pBR322/Hae III. The system's limit of detection was evaluated to be 1.1841times10<sup>-11</sup> mol/L (dsDNA with Thiazole Orange). Its working noise is much lower compared with that based on mechanical scanning one, and the stability and detecting sensitivity is high. The system is expected to be applied to both capillary array and microchip electrophoresis detection based on laser-induced fluorescence.

  • Dual mode CMOS ISFET sensor for DNA sequencing

    Genetic disorders can be identified and treated in the most suitable manner by knowing the pattern of its bases. DNA sequencing is the process of detection of the order in which these nucleotides are arranged in DNA. To overcome the disadvantages of traditional methods of DNA sequencing CMOS ISFET sensors can be used. Dual mode CMOS ISFET has the provision for image sensing which makes the DNA sequencing more accurate.

  • Novel approach of DNA sequencing algorithm to image security

    DNA computing is new wave of advancement in the field of cryptography. DNA is an ultra compact information storage medium with high security and theoretically unbreakable algorithm. We present a new technique for securing the image using DNA computing. In practical steganography images can be broken with some assumption on the information theoretic entropy of the plaintext. We discuss a modified DNA sequencing algorithm for encoding image which appear to be more secure. The image is converted to DNA code and divide into fragments. The fragments are sorted and cloned as a bacterial library which acts as cipher. The clones are extracted from the DNA mixture and decrypted using the DNA sequencing technique, Greedy Shortest Common Substring algorithm(GSCS). This algorithm takes the advantage of decreasing the time complexity and increasing the rate of accuracy in the field of image cryptography.

  • The Analysis on the Signals Denoising and Single Base Pair Resolution of DNA Sequencing

    Capillary electrophoresis - Laser Induced fluorescence (CE - LIF) signals in DNA sequencing analysis are often contaminated by random noise, which has negative influence on the accuracy and detection limit of analysis. Wavelet analysis is a powerful tool for signal denoising comparing with other conventional denoising methods, but it needs more processing time in computer. Especially in some real-time embedded analysis system, it may increase hardware investment. Conventional denoising method such as Low-Pass filter, it can realize by cheap hardware, but its denoising quality is not very satisfactory. If we proper combined the low-pass and wavelet denoising method, it will enhance the denoising efficiency and lower the system's cost. In our experiment, a novel method was presented: CE - LIF signals acquired from PMT were preprocessed by Butterworth low-pass filter in hardware circuit and the wavelet denoising was executed in computer. If we properly choose the cut-off frequency and wavelet denoising method, the denoising efficiency was high and the denoising quality was satisfactory. The denoising experiment results indicate that our denoising method can enhance the signal-to-noise ratio (SNR) and meet the requirement of single base pair resolution in DNA sequencing.

  • High speed DNA sequencing accelerator using FPGA

    This paper presents the development of High Speed DNA sequencing accelerator based on Smith-Waterman algorithm using FPGA. The scope of the paper focuses on speed optimization with parallelism. Smith-Waterman algorithm is sensitive algorithm used for procedure of DNA sequence alignments in computational molecular biology. As the number of sequence database increase exponentially, it affects the performance of Smith-Waterman algorithm in general purpose computer. Therefore, several techniques have been developed in order to speed up the crucial sequence comparison processes. Hence, optimization technique which used parallelism approach has been utilized. Moreover, the technique, which was previously used in cluster computing, has been exploited and implemented on FPGA technology. The potential of FPGA's implementation is vast in term of cost reduction, faster speed and parallelism. The design has been described using Verilog HDL and target to Altera Cyclone II 2C70. In this paper we introduce the new technique of DNA sequencing algorithm with 10 based pair DNA sequences been aligned at single clock cycle. The result of compilation consisting of 821 logic elements with total cell delay 10.472 ns and total interconnect delays 17.592 ns.

  • A New Method for Mapping Short DNA Sequencing Reads by Using Quality Scores

    New high-throughput sequencing technologies can generate millions of short DNA sequences that need to be mapped to the reference genome accurately. Majority of the mapping algorithms handle variations in the quality of these short sequences by allowing more mismatches and/or gaps in the alignment and focus to improve runtime. In this paper, we investigate ways to classify quality scores of short DNA sequencing reads and integrate them into the mapping process. We specifically studied the quality scores that suggest two alternate bases (the top quality scores for two bases are close to each other at the locus) and use of such bases to improve mapping accuracy. Our method includes generation of alternative sequences when there are alternate-quality bases in a sequence read and mapping of these alternative sequences to the reference genome. In a test using a piece of ChIP-seq data from epigenetic study, we generated and mapped alternatives of 222,755 sequence reads (out of the original 2.5 million reads) that cannot be mapped to the reference genome by the Eland algorithm. With this approach we could be able to map 12.8% of these sequence reads with alternative bases to unique positions in the genome. In this study, we demonstrate that use of alternative bases in mapping algorithms can improve mapping results dramatically.

  • A 64×64 1200fps CMOS ion-image sensor with suppressed fixed-pattern-noise for accurate high-throughput DNA sequencing

    A 64×64 CMOS ion-image sensor is demonstrated towards accurate high-throughput DNA sequencing. Dual-mode (pH/image) sensing is performed with ion-sensitive field-effect transistor (ISFET) fabricated in standard CMOS image sensor (CIS) process. After addressing physical locations of DNA slices by optical contact imaging, local pH for one DNA slice can be mapped to its physical address with accurate correlation. Moreover, pixel-to-pixel ISFET threshold voltage mismatch is reduced by correlated double sampling (CDS) readout. Measurements show a sensitivity of 103.8mV/pH and fixed-pattern-noise (FPN) reduction from 4% to 0.3% with speed of 1200fps.

  • A fully-electronic charge-based DNA sequencing CMOS biochip

    A 90×90 fully-electronic biosensor array for charge-based DNA sequence-by- synthesis is implemented in a 0.18μm standard CMOS process. Each 16 μm × 16 μm pixel consists of an integrated charge-sensing electrode connected to an embedded circuitry capable of detecting DNA polymerization and simultaneously measuring the electrode-electrolyte interface capacitance. The detection dynamic range of this sensor is +90dB while consuming 4 mW from a 3.3V supply when operating at 8.1s/frame.

  • A sequential Monte Carlo base-calling method for next-generation dna sequencing

    Recent development of next-generation sequencing platforms has dramatically increased the efficiency of obtaining genomic data. Their accuracy, reliability, and achievable read-lengths, however, often lag behind those of the conventional Sanger sequencing method. In this paper, we consider the Illumina sequencing platform and propose a novel DNA base-calling algorithm based on the sequential Monte Carlo method. It is demonstrated on experimental data that the developed algorithm is much faster than the best performing base-calling method currently available, while achieving similar accuracy.

  • Using Hidden Markov Modeling in DNA Sequencing

    Hidden Markov models (HMM) have largely demonstrated their usefulness in the fields of statistics and pattern recognition, particularly for speech recognition and hand writing recognition. In the field of genetics, the same principles of statistics and probability can be applied. DNA primarily has four bases: adenine, guanine, thymine, and cytosine, which when paired together can form nucleotides. However, the length of a nucleotide chain can be uncertain. The DNA sequence constitutes the heritable genetic information in nuclei that forms the basis for the developmental programs of all living organisms. Determining the DNA sequence is therefore useful in studying fundamental biological processes, as well as in diagnostic or forensic research. In this study, we will utilize hidden Markov models (HMM) to determine DNA sequence likelihoods. A training sequence of nucleotide bases of the first 1000 bases of rice chromosomes will be used, and the transition and emission probabilities would determine a probable DNA sequence of the next 2000 bases. This sequence should be comparable to the actual sequence. However, experimentation did not show this to be the case, despite previous experiments showing otherwise. Only a fourth of a nucleotide sequence was ever classified correctly.



Standards related to DNA Sequencing

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No standards are currently tagged "DNA Sequencing"


Jobs related to DNA Sequencing

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